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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155835117_155835468_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
155835117 - 155835468
Intron Length:
352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTGCCCTGGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCACAC
U12 Branch Point Sequence:
TAGTTCACACCT
Flanking Amino Acid:
NLLECIPDGIGQLKQLSILK
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.8
82.3
30
Major BPS
67.8
0.44
1
75
30.1
Major PPT
63.7
0.31
1.1
57.8
43.1
Minor 5ss
33.1
-1.9
2.7
40.7
39.2
Minor BPS
45.6
-0.2
2
65.98
44.4

Associated Gene:

Gene:
SCRIB
Ensembl Gene ID:
ENSAPLG00000010188
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019750
155754284 - 155843160
88877
ENSAPLT00000042571
155754284 - 155845296
91013
ENSAPLT00000010687
155754284 - 155845296
91013
ENSAPLT00000036364
155754284 - 155843160
88877
ENSAPLT00000036035
155754284 - 155845296
91013
ENSAPLT00000026053
155754284 - 155845296
91013