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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155837111_155840833_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
155837111 - 155840833
Intron Length:
3723

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
CTGTATCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTTTTTCTATTT
Flanking Amino Acid:
LRENLLKTLPTSLSFLVKLE
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.2
81.3
32.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
79.5
0.66
0.9
73.2
36.9
Minor 5ss
36.2
-1.6
2.8
45
36
Minor BPS
49.1
0.01
1.9
71.32
40.7

Associated Gene:

Gene:
SCRIB
Ensembl Gene ID:
ENSAPLG00000010188
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026053
155754284 - 155845296
91013
ENSAPLT00000019750
155754284 - 155843160
88877
ENSAPLT00000042571
155754284 - 155845296
91013
ENSAPLT00000010687
155754284 - 155845296
91013
ENSAPLT00000036364
155754284 - 155843160
88877
ENSAPLT00000036035
155754284 - 155845296
91013