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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155841717_155843029_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
155841717 - 155843029
Intron Length:
1313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CATGTTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
TATTCTGTCATG
Flanking Amino Acid:
IADFSGNPLSRLPEGFTQLR
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
69.6
42.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
77.8
0.62
0.9
71.8
37.8
Minor 5ss
30.2
-2.3
3.3
38.2
47
Minor BPS
46.4
-0.4
2.4
59.68
43

Associated Gene:

Gene:
SCRIB
Ensembl Gene ID:
ENSAPLG00000010188
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026053
155754284 - 155845296
91013
ENSAPLT00000019750
155754284 - 155843160
88877
ENSAPLT00000042571
155754284 - 155845296
91013
ENSAPLT00000010687
155754284 - 155845296
91013
ENSAPLT00000036364
155754284 - 155843160
88877
ENSAPLT00000036035
155754284 - 155845296
91013