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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155878301_155879070_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155878301 - 155879070
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATTCTATTAATG
Flanking Amino Acid:
VMQKLLRKQESTVMVLRNMV
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.2
1.02
0.7
86.6
22.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
86
0.81
0.7
80.8
24.4
Minor 5ss
30.8
-2.2
3.2
39.9
46.1
Minor BPS
57.9
0.11
1.6
64.23
37.5

Associated Gene:

Gene:
PUF60
Ensembl Gene ID:
ENSAPLG00000010150
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031488
155878001 - 155893424
15424
ENSAPLT00000010593
155878001 - 155903903
25903
ENSAPLT00000040591
155878001 - 155903903
25903
ENSAPLT00000035013
155878001 - 155898691
20691