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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155879926_155883353_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155879926 - 155883353
Intron Length:
3428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
AAATAKITAQEAVAGAAVLG
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
80.7
33.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
92.2
0.95
0.5
89.3
19.6
Minor 5ss
33.6
-1.9
3.2
47.4
48
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
PUF60
Ensembl Gene ID:
ENSAPLG00000010150
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031488
155878001 - 155893424
15424
ENSAPLT00000010593
155878001 - 155903903
25903
ENSAPLT00000040591
155878001 - 155903903
25903
ENSAPLT00000035013
155878001 - 155898691
20691