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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155883545_155883892_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
155883545 - 155883892
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAATGT
5'SS Class:
major
3'SS Sequence:
CTTCTCATTATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTATAG
Flanking Amino Acid:
TGKHKGYGFIEYEKAQSSQD
Intron Amino Acid Position:
245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
67.6
38.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79
0.65
0.8
73.4
30
Minor 5ss
39.2
-1.2
3.2
53.4
45.6
Minor BPS
49.6
-0.1
2
61.88
45.5

Associated Gene:

Gene:
PUF60
Ensembl Gene ID:
ENSAPLG00000010150
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035013
155878001 - 155898691
20691
ENSAPLT00000031488
155878001 - 155893424
15424
ENSAPLT00000010593
155878001 - 155903903
25903
ENSAPLT00000040591
155878001 - 155903903
25903