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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155884107_155885631_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155884107 - 155885631
Intron Length:
1525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
GTTTAATGGACT
Flanking Amino Acid:
SVMLGGRNIKVGRPSNIGQA
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
82.5
0.73
0.8
77.2
31.6
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
49.6
0.05
2
75.61
40.3

Associated Gene:

Gene:
PUF60
Ensembl Gene ID:
ENSAPLG00000010150
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040591
155878001 - 155903903
25903
ENSAPLT00000035013
155878001 - 155898691
20691
ENSAPLT00000031488
155878001 - 155893424
15424
ENSAPLT00000010593
155878001 - 155903903
25903