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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155885725_155886133_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155885725 - 155886133
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTTAA
5'SS Class:
major
3'SS Sequence:
CCTTCTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TACAATTCAACA
Flanking Amino Acid:
SWDSVTMKHKGFAFVEYEVP
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.59
1.2
72.3
35.4
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
72
0.5
0.8
64.7
36.4
Minor 5ss
34.5
-1.8
2.9
40.7
45.6
Minor BPS
48.4
-0.1
1.7
58.7
40.6

Associated Gene:

Gene:
PUF60
Ensembl Gene ID:
ENSAPLG00000010150
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035013
155878001 - 155898691
20691
ENSAPLT00000031488
155878001 - 155893424
15424
ENSAPLT00000010593
155878001 - 155903903
25903
ENSAPLT00000040591
155878001 - 155903903
25903