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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155890453_155891468_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155890453 - 155891468
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TACTGTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAC
U12 Branch Point Sequence:
TCTGTCTTTACT
Flanking Amino Acid:
HQQQQLTNLQMAAVTMGFGD
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.6
28.6
Major BPS
74
0.6
1
65.6
41.1
Major PPT
80.5
0.69
0.9
77.1
36.8
Minor 5ss
25.3
-2.8
3.2
31.7
42.9
Minor BPS
62.9
0.49
1.8
79.16
43.2

Associated Gene:

Gene:
PUF60
Ensembl Gene ID:
ENSAPLG00000010150
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035013
155878001 - 155898691
20691
ENSAPLT00000031488
155878001 - 155893424
15424
ENSAPLT00000010593
155878001 - 155903903
25903