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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155893425_155898582_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
155893425 - 155898582
Intron Length:
5158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATACAGT
5'SS Class:
major
3'SS Sequence:
TCTATTTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
TTTTCCATGAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.7
43.2
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
78.1
0.63
0.8
77.3
31.3
Minor 5ss
46.5
-0.4
2.8
66.5
44.6
Minor BPS
65.5
0.57
1.9
88.48
36.5

Associated Gene:

Gene:
PUF60
Ensembl Gene ID:
ENSAPLG00000010150
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035013
155878001 - 155898691
20691