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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155907750_155911066_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
155907750 - 155911066
Intron Length:
3317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTTTGTTCT
5'SS Class:
weak_major
3'SS Sequence:
CCCCTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTCCCCTTATTT
Flanking Amino Acid:
YPSLASNCDKDDCEKLANFL
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.6
0.39
1.2
69
36.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
75
0.56
0.8
73
30.3
Minor 5ss
47
-0.3
2.4
61
37.2
Minor BPS
67.1
0.62
1.6
81.24
40.8

Associated Gene:

Gene:
NRBP2
Ensembl Gene ID:
ENSAPLG00000009758
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010202
155907681 - 155921883
14203