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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155911208_155918556_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155911208 - 155918556
Intron Length:
7349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TGCCCTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGATAT
U12 Branch Point Sequence:
AGGCTGATATTT
Flanking Amino Acid:
PEPFDVETRKVVQMQCNMEL
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
51.8
0.04
1.3
50.4
43.9
Major PPT
74
0.54
0.8
65.6
36.1
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
36.4
-0.9
2.1
48.85
38.4

Associated Gene:

Gene:
NRBP2
Ensembl Gene ID:
ENSAPLG00000009758
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010202
155907681 - 155921883
14203