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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155919416_155919563_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
155919416 - 155919563
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CAGTAAT
U12 Branch Point Sequence:
CCCCCAGTAATC
Flanking Amino Acid:
RREGRPGAQWRYSEVSFLEL
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.7
89.7
22.4
Major BPS
64.3
0.36
1.2
65.3
38.6
Major PPT
82.1
0.72
0.8
73.1
37.3
Minor 5ss
34
-1.8
3.2
48.5
47.2
Minor BPS
42.5
-0.5
2.2
48.1
42.2

Associated Gene:

Gene:
NRBP2
Ensembl Gene ID:
ENSAPLG00000009758
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010202
155907681 - 155921883
14203