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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155919965_155921071_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155919965 - 155921071
Intron Length:
1107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCACCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTATTTCACC
Flanking Amino Acid:
RHSLDDPNMREFILSCLTLN
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
71.1
34.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
75
0.56
0.8
71.4
33.9
Minor 5ss
27.1
-2.6
2.9
24.2
36.8
Minor BPS
62.9
0.39
1.9
79.02
36.5

Associated Gene:

Gene:
NRBP2
Ensembl Gene ID:
ENSAPLG00000009758
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010202
155907681 - 155921883
14203