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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_155924869_155927492_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
155924869 - 155927492
Intron Length:
2624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCTGTGT
5'SS Class:
major
3'SS Sequence:
CTGTGCCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAC
U12 Branch Point Sequence:
TGTGCCTTACAG
Flanking Amino Acid:
TGDEQSPLFQVNQGNMPGIQ
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.1
59.5
41.8
Major BPS
67.3
0.43
1.2
71.3
36.7
Major PPT
76.3
0.59
0.9
68.7
37.3
Minor 5ss
32
-2.1
3.5
47.5
47.9
Minor BPS
52.5
-0
1.9
61.3
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027477
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035464
155924286 - 155927588
3303