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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15613127_15625594_R

Intron Information:

Intron Rank:
154661
Intron Class:
major
Intron Phase:
Intron Coordinates:
15613127 - 15625594
Intron Length:
12468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTAAGTTGT
5'SS Class:
major
3'SS Sequence:
TTTTTCCCCCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTGAT
U12 Branch Point Sequence:
CTACACTTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
72.5
39.9
Major BPS
65.8
0.39
1.2
57.3
41.7
Major PPT
81.1
0.7
0.7
74.7
30.6
Minor 5ss
43.2
-0.7
2.8
54.8
43.5
Minor BPS
61.1
0.43
1.6
74.81
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030791
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029016
15612032 - 15626172
14141