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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15621552_15622073_R

Intron Information:

Intron Rank:
154666
Intron Class:
minor-like
Intron Phase:
Intron Coordinates:
15621552 - 15622073
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCCTTT
5'SS Class:
weak_minor
3'SS Sequence:
TTCTCCTTTGAAG|T
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGTATTTAAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.2
71.4
41.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
77.4
0.62
1
78.9
27.1
Minor 5ss
89.8
1.34
1.2
90.9
28.7
Minor BPS
59
0.36
1.7
76.69
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030791
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043459
15621308 - 15628984
7677