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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1562262_1684399_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1562262 - 1684399
Intron Length:
122138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAATAT
5'SS Class:
major
3'SS Sequence:
AATCTTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TGATGATTACTC
Flanking Amino Acid:
NIEEVVLPKNVNPKKDSENT
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
72.8
32.2
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
83
0.74
0.8
77.3
35.9
Minor 5ss
39.1
-1.2
3.3
52.6
45.6
Minor BPS
44.7
-0.4
2.2
57.01
41.6

Associated Gene:

Gene:
SMARCC1
Ensembl Gene ID:
ENSAPLG00000014937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045670
1510299 - 1709755
199457