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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15625733_15628135_R

Intron Information:

Intron Rank:
154664
Intron Class:
major
Intron Phase:
Intron Coordinates:
15625733 - 15628135
Intron Length:
2403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATAACTT
5'SS Class:
major
3'SS Sequence:
TCTCTTATCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTCTCTTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1
63.2
40.8
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
69.8
0.45
1
70.9
32.3
Minor 5ss
43.5
-0.7
3.3
61.9
44.8
Minor BPS
69.6
0.61
1.6
80.51
35.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030791
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031222
15612032 - 15628984
16953
ENSAPLT00000043459
15621308 - 15628984
7677