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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_1565362_1688586_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1565362 - 1688586
Intron Length:
123225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ATGTCAATATAT
Flanking Amino Acid:
DPPIPEKPWKVHAKWILDTD
Intron Amino Acid Position:
304

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.8
1.08
0.7
85.3
32.2
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
86.5
0.82
0.7
85.6
29.2
Minor 5ss
38.8
-1.3
3
52.9
44.3
Minor BPS
44.6
-0.3
2.1
66.27
43.6

Associated Gene:

Gene:
SMARCC1
Ensembl Gene ID:
ENSAPLG00000014937
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038184
1510299 - 1709755
199457