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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15692630_15692761_F

Intron Information:

Intron Rank:
148278
Intron Class:
major
Intron Phase:
Intron Coordinates:
15692630 - 15692761
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTGAT
U12 Branch Point Sequence:
CTGCATGTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.7
33.5
Major BPS
72.4
0.56
1.2
63.1
44.4
Major PPT
86
0.81
0.7
84.5
23.3
Minor 5ss
39.1
-1.2
3
50.2
46.2
Minor BPS
40.4
-0.7
2
46.92
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029841
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030477
15691890 - 15697663
5774