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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15692894_15696763_F

Intron Information:

Intron Rank:
148279
Intron Class:
major
Intron Phase:
Intron Coordinates:
15692894 - 15696763
Intron Length:
3870

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCAT
5'SS Class:
strong_major
3'SS Sequence:
TATCCCTCTCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TATCACTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
76.8
33.7
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
67.8
0.4
1
64.8
36.4
Minor 5ss
32.2
-2
3
41.4
39.1
Minor BPS
55.8
0.16
2
70.48
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029841
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030477
15691890 - 15697663
5774