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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15708560_15713384_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15708560 - 15713384
Intron Length:
4825

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAC
U12 Branch Point Sequence:
GTGCCTGTGACA
Flanking Amino Acid:
GLSTFHTSEGGTYDRPQLAW
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
82.3
32.2
Major BPS
59
0.22
1.2
52.4
43.3
Major PPT
93.1
0.97
0.6
91.8
19
Minor 5ss
44.3
-0.6
2.8
53.4
43.8
Minor BPS
47.9
-0.1
2
60.17
40

Associated Gene:

Gene:
JCAD
Ensembl Gene ID:
ENSAPLG00000006380
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006606
15704854 - 15713737
8884