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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15797153_15797245_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15797153 - 15797245
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCCCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAA
U12 Branch Point Sequence:
TTAACGTTACTG
Flanking Amino Acid:
INPTKNTETLDELLCDFFEY
Intron Amino Acid Position:
413

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
75.9
35.2
Major BPS
69.7
0.49
1
59.9
38.5
Major PPT
81.6
0.71
0.6
81.5
23.6
Minor 5ss
33.8
-1.8
3
38.1
42.1
Minor BPS
46.1
-0.4
2.3
56.65
45

Associated Gene:

Gene:
MTPAP
Ensembl Gene ID:
ENSAPLG00000008962
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009334
15795560 - 15809785
14226