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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15798722_15800904_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
15798722 - 15800904
Intron Length:
2183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TCTTATTTACCT
Flanking Amino Acid:
GFQCDLSVSNSIAIRSSELL
Intron Amino Acid Position:
306

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
89.3
0.88
0.6
88.8
20.5
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
61.8
0.45
1.8
80.33
41.9

Associated Gene:

Gene:
MTPAP
Ensembl Gene ID:
ENSAPLG00000008962
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009334
15795560 - 15809785
14226