Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15801117_15806288_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

15801117 - 15806288

Intron Length:

5172

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGGTTA

5'SS Class:

strong_major

3'SS Sequence:

AATCTTGTGTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTAAA

U12 Branch Point Sequence:

GAACTATTAACT

Flanking Amino Acid:

RDTQEHAAKMKKGPFEMEYQ

Intron Amino Acid Position:

236

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

77.5

33.3

Major BPS

82.6

0.81

0.8

82.2

24.5

Major PPT

63.2

0.3

1.1

62.5

43.4

Minor 5ss

40.5

-1.1

3.3

52.2

Minor BPS

56.6

0.29

1.6

69.92

39.9

Associated Gene:

Gene:

MTPAP

Ensembl Gene ID:

ENSAPLG00000008962

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000009334

15795560 - 15809785

14226