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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15806514_15806830_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15806514 - 15806830
Intron Length:
317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
TTTTCTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTCTTTAATA
Flanking Amino Acid:
LIQKLHQADSISSQMYILLN
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1.1
80.1
34.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.4
0.75
0.8
81.5
29
Minor 5ss
41.3
-1
2.8
52.2
44.4
Minor BPS
88
1.19
0.8
91.01
22.8

Associated Gene:

Gene:
MTPAP
Ensembl Gene ID:
ENSAPLG00000008962
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009334
15795560 - 15809785
14226