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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15807065_15807624_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15807065 - 15807624
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
GTTTATCTAACT
Flanking Amino Acid:
INSHFFFENRGIHALIEFSE
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84
30.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
85.6
0.8
0.7
84.7
30
Minor 5ss
41.4
-1
2.9
49.9
46.4
Minor BPS
61.3
0.43
1.9
82.75
37.9

Associated Gene:

Gene:
MTPAP
Ensembl Gene ID:
ENSAPLG00000008962
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009334
15795560 - 15809785
14226