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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15807798_15809712_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
15807798 - 15809712
Intron Length:
1915

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TCG|GCTCGGGGG
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TGATGCTCATTT
Flanking Amino Acid:
GRLRAPAARLDAEVNTRKKT
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.4
0.18
1.4
49.2
44.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
92.8
0.96
0.6
88.6
20.9
Minor 5ss
14.1
-4.2
3.7
21.3
37.6
Minor BPS
46.1
-0.2
2.1
65.9
44.7

Associated Gene:

Gene:
MTPAP
Ensembl Gene ID:
ENSAPLG00000008962
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009334
15795560 - 15809785
14226