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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15814161_15814563_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
15814161 - 15814563
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
CTTTTTTTAATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
CTTTTTTTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
82.9
0.74
0.8
81
29.6
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
75.3
0.79
1.1
78
33.3

Associated Gene:

Gene:
MAP3K8
Ensembl Gene ID:
ENSAPLG00000009205
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025809
15813267 - 15829527
16261
ENSAPLT00000009589
15813267 - 15829503
16237