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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15815677_15815763_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
15815677 - 15815763
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAGTGATA
5'SS Class:
major
3'SS Sequence:
AACCTTTATCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATCAT
U12 Branch Point Sequence:
AAACCTTTATCC
Flanking Amino Acid:
KWTVMEYMSTGGDLVAYEDS
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
62.9
0.3
1.2
62.5
43.6
Major BPS
66.8
0.42
1.1
68
37.7
Major PPT
70.9
0.47
1
62.3
42.7
Minor 5ss
34.1
-1.8
3.5
39.3
46.3
Minor BPS
54.2
0.11
1.6
60.62
38

Associated Gene:

Gene:
MAP3K8
Ensembl Gene ID:
ENSAPLG00000009205
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025809
15813267 - 15829527
16261