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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15823500_15826779_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
15823500 - 15826779
Intron Length:
3280

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
CAATTCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TATTGATTAATC
Flanking Amino Acid:
YYPKDLRGTEIYMSPEVILC
Intron Amino Acid Position:
311

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
74.7
0.56
0.9
68.4
36.8
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
58.6
0.25
2
72.8
38.2

Associated Gene:

Gene:
MAP3K8
Ensembl Gene ID:
ENSAPLG00000009205
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025809
15813267 - 15829527
16261
ENSAPLT00000009589
15813267 - 15829503
16237