About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15920123_15920675_R

Intron Information:

Intron Rank:
131555
Intron Class:
major
Intron Phase:
Intron Coordinates:
15920123 - 15920675
Intron Length:
553

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TGCTCCATACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTCTTTCACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93
1.01
0.7
86.6
22.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
67.7
0.4
1
59.8
40.4
Minor 5ss
28.9
-2.4
3.2
39.6
46.4
Minor BPS
69.7
0.6
1.7
78.83
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017987
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020754
15918647 - 15920982
2336