Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_15946323_15946552_F

Intron Information:

Intron Rank:

141371

Intron Class:

major

Intron Phase:

Intron Coordinates:

15946323 - 15946552

Intron Length:

230

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCCATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTCCAT

U12 Branch Point Sequence:

TTTTTTTCCATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

69.3

37.4

Major BPS

77.3

0.68

1.2

86.7

32.3

Major PPT

87.2

0.84

0.6

84.5

23.5

Minor 5ss

27.1

-2.6

3.7

36.6

47.9

Minor BPS

50.5

0.01

1.9

70.41

36.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026136

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000026075

15945800 - 15947987

2188