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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16119_16432_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16119 - 16432
Intron Length:
314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTCCT
5'SS Class:
major
3'SS Sequence:
TATTATATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
ATGCTCTTATTA
Flanking Amino Acid:
YINCDKYFQQIFDCPRLKFS
Intron Amino Acid Position:
362

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
68
42.9
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80
0.67
0.9
70.9
43.7
Minor 5ss
48.5
-0.1
2.5
68.9
41.6
Minor BPS
54.4
0.13
1.6
62.54
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000008538
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019825
3263 - 59790
56528
ENSAPLT00000018278
3263 - 59790
56528
ENSAPLT00000008903
3822 - 61680
57859
ENSAPLT00000046030
3263 - 59790
56528
ENSAPLT00000020394
3263 - 88619
85357