About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16127714_16128129_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16127714 - 16128129
Intron Length:
416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCAA
5'SS Class:
major
3'SS Sequence:
TCTCCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
TGATACTGAAAT
Flanking Amino Acid:
VLSPPKGETSGQGSRYQHDS
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
65.8
41.7
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
85.6
0.8
0.7
80.2
25
Minor 5ss
28.7
-2.4
3.4
37.4
47.3
Minor BPS
55.2
0.24
1.8
73.82
41.7

Associated Gene:

Gene:
BAMBI
Ensembl Gene ID:
ENSAPLG00000009484
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009870
16126963 - 16130993
4031