About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16128418_16130917_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16128418 - 16130917
Intron Length:
2500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTACCTTTATCT
Flanking Amino Acid:
LCAMAVLLTRGEIRCYCDAA
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
63.9
42.4
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89.7
0.89
0.7
89.1
27.3
Minor 5ss
23.2
-3.1
3.2
28.7
43.7
Minor BPS
66.9
0.61
1.6
82.4
38.7

Associated Gene:

Gene:
BAMBI
Ensembl Gene ID:
ENSAPLG00000009484
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009870
16126963 - 16130993
4031