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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16160406_16163171_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16160406 - 16163171
Intron Length:
2766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTACG
5'SS Class:
strong_major
3'SS Sequence:
TTAATTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATATTTAATT
Flanking Amino Acid:
GWPADHAEKQASRLREEAHN
Intron Amino Acid Position:
583

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.5
33.9
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
78.8
0.65
1
73.2
41.7
Minor 5ss
30.6
-2.2
2.5
34.1
41.4
Minor BPS
72.9
0.8
1.4
85.75
34.2

Associated Gene:

Gene:
WAC
Ensembl Gene ID:
ENSAPLG00000009527
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009965
16157481 - 16214958
57478