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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16163359_16170173_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16163359 - 16170173
Intron Length:
6815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTTCTTAAAT
Flanking Amino Acid:
PASPRSLQRSSSQRSPSPGP
Intron Amino Acid Position:
520

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.9
76.7
34.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
87.3
0.84
0.6
81.2
30.9
Minor 5ss
45.7
-0.5
2.5
58.5
46
Minor BPS
84.8
1.17
1.1
97.05
26.9

Associated Gene:

Gene:
WAC
Ensembl Gene ID:
ENSAPLG00000009527
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009965
16157481 - 16214958
57478