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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16174562_16175536_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16174562 - 16175536
Intron Length:
975

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTAAA
5'SS Class:
major
3'SS Sequence:
TTCTCCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTCTCCTTTACA
Flanking Amino Acid:
ISQAAQLSTQAQPSNQSPMS
Intron Amino Acid Position:
430

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.69
1
77.8
31.4
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
88.8
0.87
0.6
83.5
24.8
Minor 5ss
41.2
-1
2.5
51
45.5
Minor BPS
76.6
0.83
1.6
83.55
36.9

Associated Gene:

Gene:
WAC
Ensembl Gene ID:
ENSAPLG00000009527
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009965
16157481 - 16214958
57478