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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16177773_16187302_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16177773 - 16187302
Intron Length:
9530

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTCTA
5'SS Class:
strong_major
3'SS Sequence:
GTATTCCATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
CTTTTTGTATTC
Flanking Amino Acid:
SIPSQKTERKESTSVDKSVP
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
78.2
38.2
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
74
0.54
1
71
39.8
Minor 5ss
36.7
-1.5
3.2
49.9
46.3
Minor BPS
46.1
-0.3
2.1
60.49
40.3

Associated Gene:

Gene:
WAC
Ensembl Gene ID:
ENSAPLG00000009527
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009965
16157481 - 16214958
57478