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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16189172_16189556_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16189172 - 16189556
Intron Length:
385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGCG
5'SS Class:
major
3'SS Sequence:
TTCTTTTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGACTTAACT
Flanking Amino Acid:
QWEKPKEWLEREQRQKEASK
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
64.3
40
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
92.9
0.96
0.6
92.3
18.2
Minor 5ss
39.2
-1.2
3
50.4
46
Minor BPS
77.5
0.94
1.5
93.1
35.2

Associated Gene:

Gene:
WAC
Ensembl Gene ID:
ENSAPLG00000009527
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009965
16157481 - 16214958
57478