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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16213282_16214725_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16213282 - 16214725
Intron Length:
1444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGCA
5'SS Class:
major
3'SS Sequence:
TCTTCTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
TCTTCTGTTACA
Flanking Amino Acid:
DRRGDSQPYQALKYSSKSHP
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.2
66.1
39.9
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
85
0.79
0.8
79.4
32.6
Minor 5ss
37.4
-1.4
3.3
50.7
45.6
Minor BPS
51.2
0.03
2.3
70.62
41.9

Associated Gene:

Gene:
WAC
Ensembl Gene ID:
ENSAPLG00000009527
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009965
16157481 - 16214958
57478