About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16214763_16214917_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16214763 - 16214917
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATCCC
5'SS Class:
major
3'SS Sequence:
TTTCTCTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TCTCTCTCCATT
Flanking Amino Acid:
YARKQQRLSDGCHDRRGDSQ
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.1
63.1
41.8
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
88.8
0.87
0.6
81.4
30.7
Minor 5ss
34.4
-1.8
2.9
37.3
40
Minor BPS
48.1
-0
1.9
68.82
42.7

Associated Gene:

Gene:
WAC
Ensembl Gene ID:
ENSAPLG00000009527
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009965
16157481 - 16214958
57478