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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16216451_16216558_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
16216451 - 16216558
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAA|GCCCTGAAT
5'SS Class:
weak_major
3'SS Sequence:
TGCTTACATGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AAATTCTTAACG
Flanking Amino Acid:
EKSKLQHEIQILDSSRTLLN
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.5
0.01
1.3
55
42.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
61.3
0.26
1.1
61.5
38.5
Minor 5ss
19.7
-3.5
3.9
30.9
36.6
Minor BPS
71.9
0.55
1.3
67.86
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022680
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039491
16216307 - 16216651
345