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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16221117_16235200_F

Intron Information:

Intron Rank:
139045
Intron Class:
major
Intron Phase:
Intron Coordinates:
16221117 - 16235200
Intron Length:
14084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CACTGATAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
75.7
0.58
0.9
69.7
36.2
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
40.6
-0.6
2.2
55.09
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024872
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033247
16220080 - 16235550
15471