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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16296320_16310366_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16296320 - 16310366
Intron Length:
14047

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCAAG
5'SS Class:
major
3'SS Sequence:
TTTCATTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTATTTTCATT
Flanking Amino Acid:
ALSTGSGSDTGLYELLAALP
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1
69
43.5
Major BPS
100
1.24
0.5
100
0
Major PPT
85
0.79
0.7
80.3
31.4
Minor 5ss
37.7
-1.4
3.1
47.9
47.8
Minor BPS
58.4
0.35
1.7
79.53
37.3

Associated Gene:

Gene:
MPP7
Ensembl Gene ID:
ENSAPLG00000009795
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018214
16266725 - 16401016
134292
ENSAPLT00000010247
16258588 - 16401016
142429
ENSAPLT00000022249
16258588 - 16401016
142429