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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16338400_16342936_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
16338400 - 16342936
Intron Length:
4537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
ATCTCCCCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
TCTGTGTCAATT
Flanking Amino Acid:
LHSAAALADDLAEELQSKPL
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
1
81.7
30
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
72.6
0.51
0.8
65.6
29.7
Minor 5ss
39.7
-1.2
3.4
57.1
40.8
Minor BPS
46.1
-0.2
2.3
66.82
44.9

Associated Gene:

Gene:
MPP7
Ensembl Gene ID:
ENSAPLG00000009795
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022249
16258588 - 16401016
142429
ENSAPLT00000018214
16266725 - 16401016
134292
ENSAPLT00000010247
16258588 - 16401016
142429