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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16381370_16388748_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
16381370 - 16388748
Intron Length:
7379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGCAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATTTTGAAAA
Flanking Amino Acid:
CAGHNSGSYLAGFRRSFRLS
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.8
83.1
30.9
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
83.3
0.75
0.8
77.7
35.3
Minor 5ss
35.6
-1.6
3
47.8
47.9
Minor BPS
59.3
0.29
1.5
70.08
35.6

Associated Gene:

Gene:
MPP7
Ensembl Gene ID:
ENSAPLG00000009795
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018214
16266725 - 16401016
134292