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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_16397037_16398090_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
16397037 - 16398090
Intron Length:
1054

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGGTGA
5'SS Class:
major
3'SS Sequence:
CCTTCTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
GTTGCTTTCACC
Flanking Amino Acid:
HLFETDVQNNKFIEYGEYKN
Intron Amino Acid Position:
433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.9
0.49
1
62.1
39.1
Major BPS
68
0.45
1
57.8
39
Major PPT
73.8
0.54
0.8
67.7
32.4
Minor 5ss
43.9
-0.7
3.1
54.7
47.6
Minor BPS
58.8
0.26
1.9
70.5
41.3

Associated Gene:

Gene:
MPP7
Ensembl Gene ID:
ENSAPLG00000009795
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022249
16258588 - 16401016
142429
ENSAPLT00000018214
16266725 - 16401016
134292
ENSAPLT00000010247
16258588 - 16401016
142429